STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1294Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (136 aa)    
Predicted Functional Partners:
Apau_1341
COGs: COG0213 Thymidine phosphorylase; InterProIPR000312:IPR013102:IPR017459:IPR020072:IPR 017872:IPR018723:IPR000053:IPR018090; KEGG: tai:Taci_1021 pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like; Protein of unknown function DUF2254, membrane; PRIAM: Thymidine phosphorylase; SPTR: D1B5G2 Pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl tr [...]
 
 0.996
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.953
Apau_1884
COGs: COG0572 Uridine kinase; InterPro IPR018163:IPR003593:IPR006083; KEGG: tai:Taci_1361 AAA ATPase; PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase; SPTR: D1B6F1 AAA ATPase; PFAM: Phosphoribulokinase / Uridine kinase family.
 
  
 0.898
Apau_1340
Inosine guanosine and xanthosine phosphorylase family; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
 
 
 0.881
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
    
 0.874
surE
5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
     
 0.857
Apau_1290
PhoH family protein; COGs: COG1702 Phosphate starvation-inducible protein PhoH predicted ATPase; InterPro IPR003714; KEGG: tai:Taci_1069 PhoH family protein; PFAM: PhoH family protein; SPTR: D1B5L0 PhoH family protein; PFAM: PhoH-like protein.
  
    0.832
Apau_1293
Protein of unknown function DUF21; COGs: COG1253 Hemolysins and related protein containing CBS domains; InterPro IPR002550:IPR000644:IPR005170; KEGG: tai:Taci_1066 protein of unknown function DUF21; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; SPTR: D1B5K7 Putative uncharacterized protein; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.
  
    0.819
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.805
Apau_0583
GTP-binding protein HSR1-related; InterPro IPR002917; KEGG: ana:alr3472 hypothetical protein; PFAM: GTP-binding protein HSR1-related; SPTR: B1RMN0 Putative GTPase; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
  
    0.779
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.