STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1308Pilus retraction ATPase PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006162:IPR001482:IPR006321:IPR003593; KEGG: tai:Taci_1054 twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: D1B5J5 Twitching motility protein; TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (376 aa)    
Predicted Functional Partners:
Apau_1309
COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004; KEGG: tai:Taci_1053 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: D1B5J4 Type II secretion system protein; manually curated; PFAM: Bacterial type II secretion system protein F domain.
  
 0.938
Apau_1307
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR007831; KEGG: tai:Taci_1055 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: D1B5J6 Type II secretion system protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E.
 
  
0.881
Apau_1961
Peptidase A24A domain protein; COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627:IPR000045; KEGG: tai:Taci_1561 peptidase A24A domain protein; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; SPTR: C1TNA7 Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
 
   
 0.836
Apau_1055
COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076:IPR003004:IPR001992; KEGG: jde:Jden_1345 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: C1TK44 Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.819
Apau_1315
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; KEGG: tai:Taci_1047 Tfp pilus assembly protein ATPase PilM-like protein; SPTR: D1B5I8 Tfp pilus assembly protein ATPase PilM-like protein; PFAM: Competence protein A.
 
   
 0.700
Apau_1319
Type II and III secretion system protein; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR011662:IPR005644:IPR004846:IPR001775; KEGG: tai:Taci_1043 type II and III secretion system protein; PFAM: type II and III secretion system protein; Secretin/TonB short domain; NolW domain protein; SPTR: D1B5I4 Type II and III secretion system protein; PFAM: Bacterial type II and III secretion system protein.
 
   
 0.636
Apau_1316
InterPro IPR007813; KEGG: tai:Taci_1046 fimbrial assembly family protein; PFAM: Fimbrial assembly family protein; SPTR: D1B5I7 Fimbrial assembly family protein; PFAM: Fimbrial assembly protein (PilN).
  
  
 0.618
Apau_1314
COGs: COG3419 Tfp pilus assembly protein tip-associated adhesin PilY1; KEGG: tai:Taci_1048 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; SPTR: D1B5I9 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein.
     
 0.615
Apau_1312
InterPro IPR012902; KEGG: tai:Taci_1050 hypothetical protein; SPTR: D1B5J1 Putative uncharacterized protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
     
 0.609
Apau_1313
KEGG: tai:Taci_1049 hypothetical protein; SPTR: D1B5J0 Putative uncharacterized protein.
     
 0.608
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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