STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1519Peptidase S16 lon domain protein; COGs: COG1067 ATP-dependent protease; InterPro IPR020568:IPR001984; KEGG: tai:Taci_0981 peptidase S16 lon domain protein; SPTR: D1BAB0 Peptidase S16 lon domain protein; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease. (830 aa)    
Predicted Functional Partners:
Apau_1518
DNA-(apurinic or apyrimidinic site) lyase; COGs: COG0177 EndoIII-related endonuclease; InterPro IPR011257:IPR004035:IPR003265:IPR003651; KEGG: tai:Taci_0980 DNA-(apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; PRIAM: DNA-(apurinic or apyrimidinic site) lyase; SMART: HhH-GPD family protein; SPTR: D1BAA9 DNA-(Apurinic or apyrimidinic site) lyase; PFAM: HhH-GPD superfamily base excision DNA repair protein.
       0.825
Apau_1517
Protein of unknown function DUF362; COGs: COG2006 conserved hypothetical protein; InterPro IPR017900:IPR007160:IPR001450:IPR017896; KEGG: mpd:MCP_1114 hypothetical protein; PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8GKV1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362).
       0.788
Apau_1520
Cold-shock DNA-binding protein family; COGs: COG1278 Cold shock protein; InterProIPR016027:IPR012340:IPR019844:IPR002059:IPR 012156:IPR011129; KEGG: tai:Taci_0982 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: D1BAB1 Cold-shock DNA-binding domain protein; PFAM: 'Cold-shock' DNA-binding domain.
       0.438
Apau_1354
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.422
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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