STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Apau_1535Membrane bound hydrogenase subunit mbhJ; COGs: COG3260 Ni Fe-hydrogenase III small subunit; InterPro IPR006137; KEGG: mhu:Mhun_2588 NADH ubiquinone oxidoreductase, 20 kDa subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; SPTR: C1TPN8 Ni,Fe-hydrogenase III small subunit; PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit. (153 aa)    
Predicted Functional Partners:
Apau_1532
Respiratory-chain NADH dehydrogenase subunit 1; COGs: COG0650 Formate hydrogenlyase subunit 4; InterPro IPR001694; KEGG: mla:Mlab_0960 membrane bound hydrogenase subunit MbhM; PFAM: respiratory-chain NADH dehydrogenase subunit 1; SPTR: C1TPP1 Formate hydrogenlyase subunit 4; PFAM: NADH dehydrogenase.
 
 0.999
Apau_1533
COGs: COG3261 Ni Fe-hydrogenase III large subunit; InterPro IPR001501:IPR001135:IPR018194; KEGG: mla:Mlab_0959 membrane bound hydrogenase subunit MbhL; PFAM: nickel-dependent hydrogenase large subunit; NADH-ubiquinone oxidoreductase chain 49kDa; SPTR: C1TPP0 Ni,Fe-hydrogenase III large subunit; PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; Nickel-dependent hydrogenase.
 0.999
Apau_1534
NADH dehydrogenase (ubiquinone) 30 kDa subunit; COGs: COG3262 Ni Fe-hydrogenase III component G; InterPro IPR001268; KEGG: tsi:TSIB_1285 membrane-bound hydrogenase MBH 2, subunit Mbh2K (hydrogenase subunit); PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; SPTR: C1TPN9 Ni,Fe-hydrogenase III component G; PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
 
 
 0.998
Apau_1537
NADH/Ubiquinone/plastoquinone (complex I); COGs: COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter MnhD subunit; InterPro IPR003918:IPR001750; KEGG: mhu:Mhun_2586 putative monovalent cation/H+ antiporter subunit D; PFAM: NADH/Ubiquinone/plastoquinone (complex I); SPTR: C1TPN6 Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit; PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains.
 
 
 0.998
Apau_1531
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); InterPro IPR017896:IPR001450:IPR017900; KEGG: mhu:Mhun_2592 NADH-plastoquinone oxidoreductase subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: C1TPP2 NADH:ubiquinone oxidoreductase chain I-like protein; PFAM: 4Fe-4S binding domain.
 
 0.997
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 0.971
Apau_0240
NADH dehydrogenase (quinone); COGs: COG1894 NADH:ubiquinone oxidoreductase NADH-binding (51 kD) subunit; InterProIPR009737:IPR011538:IPR019554:IPR019575:IPR 001450:IPR017900:IPR001949:IPR012336:IPR017896:IPR012335; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Sucraseferredoxin family protein; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; 4Fe-4S ferredoxin iron-sulfur binding domain protein; PRIAM: NADH dehydrogenase (quinone); SPTR: C1TS [...]
  
 0.964
Apau_1517
Protein of unknown function DUF362; COGs: COG2006 conserved hypothetical protein; InterPro IPR017900:IPR007160:IPR001450:IPR017896; KEGG: mpd:MCP_1114 hypothetical protein; PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: B8GKV1 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF362).
  
 0.962
Apau_1539
Na+/H+ antiporter MnhB subunit-related protein; InterPro IPR007182; KEGG: mhu:Mhun_2584 putative monovalent cation/H+ antiporter subunit B; PFAM: Na+/H+ antiporter MnhB subunit-related protein; SPTR: B5I9P5 Na+/H+ antiporter family domain protein; PFAM: Domain related to MnhB subunit of Na+/H+ antiporter.
  
   0.940
Apau_1540
KEGG: tsi:TSIB_1291 membrane-bound hydrogenase MBH 2, subunit Mbh2E (Na+/H+ transporter subunit); SPTR: C1TPN3 Putative uncharacterized protein.
  
   0.940
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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