STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1906Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011711; KEGG: dat:HRM2_15280 transcriptional regulator (GntR family protein); PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1TQG5 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (237 aa)    
Predicted Functional Partners:
Apau_0075
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: tai:Taci_1439 transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: D1B6M8 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
     0.775
Apau_0428
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011711; KEGG: tai:Taci_1651 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: D1B774 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
     0.774
Apau_1904
Amidinotransferase; COGs: COG1834 N-Dimethylarginine dimethylaminohydrolase; InterPro IPR003198; KEGG: sgr:SGR_910 putative amidinotransferase; PFAM: amidinotransferase; SPTR: A8U2A0 Amidinotransferase; PFAM: Amidinotransferase.
       0.693
Apau_1905
Amidohydrolase; COGs: COG1228 Imidazolonepropionase and related amidohydrolase; InterPro IPR011059:IPR006680; KEGG: ppr:PBPRA1536 isoaspartyl dipeptidase; PFAM: amidohydrolase; SPTR: Q6LRX9 Hypothetical isoaspartyl dipeptidase; PFAM: Amidohydrolase family; TIGRFAM: isoaspartyl dipeptidase IadA.
       0.689
Apau_1885
Transcriptional regulator, GntR family; COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011711; KEGG: tai:Taci_1362 GntR domain protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: D1B6F2 GntR domain protein; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.648
Apau_1909
Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011991:IPR000524:IPR011711; KEGG: tai:Taci_1669 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1TRU6 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
    
0.623
Apau_1903
Transporter, NhaC family; COGs: COG1757 Na+/H+ antiporter; InterPro IPR010916:IPR004770:IPR018461; KEGG: tai:Taci_1400 Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter NhaC-like; SPTR: D1B6J0 Na+/H+ antiporter NhaC; TIGRFAM: Na+/H+ antiporter NhaC; PFAM: Na+/H+ antiporter family; TIGRFAM: Na+/H+ antiporter NhaC; transporter, NhaC family (TC 2.A.35).
       0.532
Apau_1907
COGs: COG2423 ornithine cyclodeaminase mu-crystallin homolog; InterPro IPR016040:IPR003462; KEGG: bbe:BBR47_45350 ornithine cyclodeaminase/mu-crystallin family protein; PFAM: ornithine cyclodeaminase/mu-crystallin; PRIAM: Ornithine cyclodeaminase; SPTR: B4AIH3 Alanine dehydrogenase; PFAM: Ornithine cyclodeaminase/mu-crystallin family.
       0.520
Apau_1908
Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterProIPR015424:IPR001176:IPR004838:IPR015421:IPR 015422:IPR004839; KEGG: bbe:BBR47_45340 putative aminotransferase; PFAM: aminotransferase class I and II; SPTR: C0ZJD6 Putative aminotransferase; PFAM: Aminotransferase class I and II.
  
    0.492
Apau_0760
GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR013668:IPR001266:IPR011711; KEGG: tai:Taci_1430 GntR domain protein; PFAM: GntR domain protein; Ribonuclease R winged-helix domain protein; Ribosomal protein S19e; SPTR: D1B6L9 GntR domain protein; PFAM: Ribonuclease R winged-helix domain; FCD domain.
  
  
 0.482
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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