STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_1966RNA-metabolising metallo-beta-lactamase; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR016129:IPR011108; KEGG: tai:Taci_1566 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: D1B6Z6 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. (536 aa)    
Predicted Functional Partners:
Apau_0401
KEGG: tai:Taci_0287 hypothetical protein; SPTR: D1B8C1 Putative uncharacterized protein.
    
 0.991
Apau_1067
KEGG: tai:Taci_0662 hypothetical protein; SPTR: D1B9E5 Putative uncharacterized protein.
    
 0.991
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.965
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.964
Apau_1528
COGs: COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains; InterProIPR002298:IPR020046:IPR020047:IPR001098:IPR 018320:IPR002421:IPR008918:IPR020045:IPR019760; KEGG: tai:Taci_1079 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; PRIAM: DNA-directed DNA polymerase; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA-directed DNA polymerase; SPTR: D1B5M0 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonucleas [...]
  
 0.954
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.949
Apau_0388
FecR protein; InterPro IPR006860; KEGG: maq:Maqu_2531 peptidoglycan-binding LysM; PFAM: FecR protein; SPTR: A1U3N7 Peptidoglycan-binding LysM; PFAM: FecR protein.
   
 0.888
Apau_0340
Signal transduction histidine kinase, LytS; KEGG: aoe:Clos_2437 hypothetical protein; SPTR: A8MJI7 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1393).
   
 0.884
Apau_1911
Tetratricopeptide TPR_2 repeat protein; InterProIPR011990:IPR019734:IPR013026:IPR001440:IPR 013105; KEGG: cyh:Cyan8802_1328 peptidase S1 and S6 chymotrypsin/Hap; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SPTR: C7QP60 Peptidase S1 and S6 chymotrypsin/Hap; PFAM: Tetratricopeptide repeat.
   
 0.884
Apau_1341
COGs: COG0213 Thymidine phosphorylase; InterProIPR000312:IPR013102:IPR017459:IPR020072:IPR 017872:IPR018723:IPR000053:IPR018090; KEGG: tai:Taci_1021 pyrimidine-nucleoside phosphorylase; PFAM: Pyrimidine nucleoside phosphorylase domain; glycosyl transferase family 3; Glycosyl transferase, family 3-like; Protein of unknown function DUF2254, membrane; PRIAM: Thymidine phosphorylase; SPTR: D1B5G2 Pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: Glycosyl transferase family, a/b domain; Pyrimidine nucleoside phosphorylase C-terminal domain; Glycosyl tr [...]
 
    0.743
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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