STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Apau_1969Metal dependent phosphohydrolase; COGs: COG2316 hydrolase (HD superfamily); InterPro IPR006675; KEGG: tai:Taci_1569 metal dependent phophohydrolase; SPTR: D1B6Z9 Metal dependent phophohydrolase; TIGRFAM: metal dependent phophohydrolase; TIGRFAM: uncharacterized domain HDIG. (188 aa)    
Predicted Functional Partners:
lysS
COGs: COG1190 Lysyl-tRNA synthetase (class II); InterProIPR018149:IPR006195:IPR004365:IPR004364:IPR 002313:IPR012340:IPR016027; KEGG: tai:Taci_1118 lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; SPTR: D1B5Q9 Lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; Belongs to the class-II aminoacyl-tRNA synthetase family.
      0.907
Apau_1970
CMP/dCMP deaminase zinc-binding; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016193:IPR016473:IPR016192:IPR002125; KEGG: tai:Taci_1570 CMP/dCMP deaminase zinc-binding protein; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: D1B700 CMP/dCMP deaminase zinc-binding protein; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region.
       0.811
Apau_1967
COGs: COG4585 Signal transduction histidine kinase; InterPro IPR003594:IPR011712; KEGG: tai:Taci_1567 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; PRIAM: Histidine kinase; SPTR: D1B6Z7 Histidine kinase; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.787
Apau_1968
Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR011006:IPR016032:IPR000792:IPR011991:IPR 001789; KEGG: tai:Taci_1568 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: C9M8B3 DNA-binding response regulator, LuxR family; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family.
       0.787
Apau_2010
B3/4 domain protein; COGs: COG3382 conserved hypothetical protein; InterPro IPR020825:IPR005146; KEGG: bcl:ABC3937 hypothetical protein; PFAM: B3/4 domain protein; SPTR: Q5WAZ2 Putative uncharacterized protein; PFAM: B3/4 domain.
 
      0.668
Apau_1966
RNA-metabolising metallo-beta-lactamase; COGs: COG1236 exonuclease of the beta-lactamase fold involved in RNA processing; InterPro IPR016129:IPR011108; KEGG: tai:Taci_1566 beta-lactamase domain protein; PFAM: RNA-metabolising metallo-beta-lactamase; SPTR: D1B6Z6 Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain.
       0.626
Apau_1971
(NiFe) hydrogenase maturation protein HypF; COGs: COG0068 Hydrogenase maturation factor; InterProIPR017945:IPR001792:IPR004421:IPR017968:IPR 006070:IPR011125; KEGG: sat:SYN_00600 hydrogenase maturation protein; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; SPTR: C1TMC9 (NiFe) hydrogenase maturation protein HypF; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF.
       0.542
Apau_1965
KEGG: tai:Taci_1565 hypothetical protein; SPTR: D1B6Z5 Putative uncharacterized protein.
       0.533
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
       0.437
Apau_1963
COGs: COG1560 Lauroyl/myristoyl acyltransferase; InterPro IPR004960; KEGG: tai:Taci_1563 lipid A biosynthesis acyltransferase; PFAM: lipid A biosynthesis acyltransferase; SPTR: D1B6Z3 Lipid A biosynthesis acyltransferase; PFAM: Bacterial lipid A biosynthesis acyltransferase.
       0.407
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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