STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Apau_2187Helicase domain protein; COGs: COG1204 Superfamily II helicase; InterPro IPR014021:IPR001650:IPR014001:IPR011545; KEGG: tai:Taci_0221 helicase domain protein; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; SPTR: D1B857 Helicase domain protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase. (568 aa)    
Predicted Functional Partners:
Apau_2188
InterPro IPR016181:IPR000182; KEGG: tai:Taci_0220 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: D1B856 GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family.
 
     0.814
Apau_2184
Peptidase C26; COGs: COG2071 glutamine amidotransferase; InterPro IPR017926:IPR011697; KEGG: rxy:Rxyl_1963 peptidase C26; PFAM: peptidase C26; SPTR: Q8G7J4 Possible amidotransferase subunit; PFAM: Peptidase C26.
       0.773
Apau_2185
Protein of unknown function DUF86; COGs: COG2445 conserved hypothetical protein; InterPro IPR008201; KEGG: gbm:Gbem_2977 protein of unknown function DUF86; PFAM: protein of unknown function DUF86; SPTR: B5EJ25 Putative uncharacterized protein; PFAM: Protein of unknown function DUF86.
       0.773
Apau_2186
InterPro IPR002934; KEGG: pph:Ppha_1397 DNA polymerase beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: B4S9W4 DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain.
       0.773
Apau_2213
Putative FHA domain containing protein; KEGG: tai:Taci_0240 hypothetical protein; SPTR: D1B875 Putative uncharacterized protein.
  
     0.696
Apau_1045
O-antigen polymerase; InterPro IPR007016; KEGG: tai:Taci_0657 O-antigen polymerase; PFAM: O-antigen polymerase; SPTR: D1B9E0 O-antigen polymerase; PFAM: O-Antigen ligase.
  
     0.691
Apau_2189
Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: tai:Taci_0219 protein of unknown function DUF342; PFAM: protein of unknown function DUF342; SPTR: D1B855 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342).
       0.686
Apau_2190
Putative PAS/PAC sensor protein; InterPro IPR011006:IPR001789:IPR000014:IPR013656; KEGG: mem:Memar_1158 putative PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; response regulator receiver; SMART: response regulator receiver; SPTR: C1TPJ4 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box.
       0.686
Apau_2231
Major facilitator superfamily MFS_1; InterPro IPR016196:IPR011701; KEGG: pca:Pcar_2468 putative transport protein; PFAM: major facilitator superfamily MFS_1; SPTR: C9M5X8 Transporter, major facilitator family; PFAM: Major Facilitator Superfamily.
  
     0.599
Apau_0187
InterPro IPR001950; KEGG: ade:Adeh_0860 translation initiation factor 1 (eIF-1/SUI1); PFAM: translation initiation factor SUI1; SPTR: Q2IPA7 Translation initiation factor 1 (EIF-1/SUI1); PFAM: Translation initiation factor SUI1.
  
     0.587
Your Current Organism:
Aminomonas paucivorans
NCBI taxonomy Id: 584708
Other names: A. paucivorans DSM 12260, Aminomonas paucivorans DSM 12260, Aminomonas paucivorans str. DSM 12260, Aminomonas paucivorans strain DSM 12260
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