STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDC28_104152Unannotated protein. (1112 aa)    
Predicted Functional Partners:
EDC28_10719
Unannotated protein.
  
0.999
EDC28_101116
Unannotated protein.
  
0.995
EDC28_102196
Unannotated protein.
 
0.995
EDC28_1052
Unannotated protein.
 
0.992
EDC28_10347
Unannotated protein.
  
 0.990
EDC28_10622
Unannotated protein.
 
0.990
EDC28_106169
Unannotated protein.
  
 0.990
EDC28_10782
Unannotated protein.
  
 0.988
EDC28_10564
Unannotated protein.
  
 0.988
EDC28_10570
Unannotated protein.
 0.988
Your Current Organism:
Gallaecimonas pentaromativorans
NCBI taxonomy Id: 584787
Other names: CECT 7479, DSM 21945, G. pentaromativorans, Gallaecimonas pentaromativorans Rodriguez-Blanco et al. 2010, gamma proteobacterium CEE_131, strain CEE_131
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.