Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DR95_1025glu-decarb-GAD: glutamate decarboxylase. (463 aa)    
Predicted Functional Partners:
gadC
Glutamate:gamma-aminobutyrate antiporter; 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter.
 
  
 0.948
DR95_245
Hypothetical protein.
  
  
 0.518
DR95_880
Linear amide C-N hydrolase, choloylglycine hydrolase family protein.
 
     0.510
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
  
 0.493
cbh_2
Linear amide C-N hydrolase, choloylglycine hydrolase family protein.
 
     0.492
DR95_2580
mgtC family protein.
   
  
 0.417
slp
Slp: outer membrane lipo, Slp family protein.
   
 
 0.416
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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