Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bglGCryptic beta-glucoside bgl operon antiterminator. (278 aa)    
Predicted Functional Partners:
bglF
PTS system beta-glucoside-specific EIIBCA component.
 
 0.976
DR95_1043
Glycosyl hydrolase 1 family protein.
 
  
 0.894
sacX
PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component.
 
 0.871
DR95_3550
Phosphotransferase system, EIIB family protein.
 
 0.860
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
 
 0.826
malP_2
PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component domain protein.
 
 
 0.812
ptsG_1
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
 
 0.783
malX
EIIB_glc: PTS system, glucose-like IIB component domain protein.
 
 
 0.734
chbA
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component.
 
  
 0.728
chbB
N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB component.
 
  
 0.714
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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