Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR95_1127Methyltransferase domain protein. (219 aa)    
Predicted Functional Partners:
DR95_1126
Hypothetical protein.
       0.603
DR95_2259
Virulence plasmid 28.1kDa A family protein.
  
     0.547
DR95_1337
Alpha/beta hydrolase fold family protein.
 
    0.518
DR95_1165
sm_term_P27: phage terminase, small subunit, P27 family.
  
     0.514
DR95_2266
Rhs_assc_core: RHS repeat-associated core domain protein.
  
     0.505
DR95_3508
sm_term_P27: phage terminase, small subunit, P27 family.
  
     0.491
hpmA
Hemolysin.
  
    0.479
spvB
Virulence plasmid 65kDa B family protein.
  
     0.460
shlB
Hemolysin transporter protein shlB.
  
    0.440
DR95_2633
Hypothetical protein.
  
     0.432
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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