Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DR95_1182Bacterial regulatory s, gntR family protein. (354 aa)    
Predicted Functional Partners:
DR95_1181
kilA-N domain protein.
 
    0.857
DR95_1183
Hypothetical protein.
       0.778
DR95_1180
Hypothetical protein.
       0.725
shlB
Hemolysin transporter protein shlB.
  
     0.671
hpmA
Hemolysin.
  
     0.663
DR95_1179
Phage antitermination Q family protein.
       0.650
yceB
Hypothetical protein.
  
     0.637
DR95_2846
Chondroitin ABC endolyase 1; Endolytic, broad-specificity glycosaminoglycan lyase, which degrades the polysaccharides chondroitin, chondroitin-4-sulfate, chondroitin-6-sulfate, dermatan sulfate and to a lesser extent hyaluronan, by beta-elimination of 1,4-hexosaminidic bond to unsaturated tetrasaccharides and disaccharides. Is not active against keratan sulfate, heparan sulfate, and heparin. Is able to promote functional recovery in the injured central nervous system (CNS), via its role in the disruption of the normal organization of the extracellular matrix (ECM).
 
    0.614
DR95_2847
Autotransporter beta-domain protein.
  
     0.579
betC
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
  
     0.519
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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