Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoQVirulence sensor histidine kinase phoQ. (487 aa)    
Predicted Functional Partners:
phoP
Transcriptional regulatory protein phoP.
 0.999
arcB
Aerobic respiration control sensor protein ArcB.
 
 
 0.944
DR95_2681
asmA family protein.
  
     0.747
baeR
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.733
cpxR
Transcriptional regulatory protein CpxR.
 
 
 0.730
rcsD
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
 
 
 0.721
rcsC
Sensor kinase protein RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 
 0.712
helD
Helicase IV.
  
     0.701
ompR
Transcriptional regulatory protein ompR.
 
 
 0.693
phoB
phoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.690
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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