STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR95_1237Autotrans_barl: outer membrane autotransporter barrel domain protein. (973 aa)    
Predicted Functional Partners:
DR95_1522
Hemolysin secretion/activation ShlB/FhaC/HecB family protein.
 
  
 0.651
shlB
Hemolysin transporter protein shlB.
  
  
 0.590
DR95_2401
Pertussis toxin, subunit 1 family protein.
   
    0.538
arcB
Aerobic respiration control sensor protein ArcB.
  
  
 0.494
DR95_527
Putative terminase large subunit.
  
     0.487
prtA
Secreted protease A.
  
  
 0.454
prtA-2
Secreted protease A.
  
  
 0.454
DR95_1903
rTX-family protein.
  
  
 0.454
DR95_2075
Segment 14/17; Putative complete genome.
  
  
 0.454
prtA-3
Secreted protease A.
  
  
 0.454
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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