STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimC_2Hypothetical protein; Pili assembly chaperone PapD, C-terminal domain protein. (230 aa)    
Predicted Functional Partners:
fimD_3
papC N-terminal domain protein.
 
   0.944
DR95_2188
papC N-terminal domain protein.
  
   0.858
htrE_2
papC N-terminal domain protein.
  
   0.858
papC
Outer membrane usher protein papC.
  
   0.858
elfC_4
papC N-terminal domain protein.
  
   0.858
DR95_3565
papC N-terminal domain protein.
  
   0.858
papC-2
Outer membrane usher protein papC.
  
   0.858
DR95_772
papC N-terminal domain protein.
  
   0.858
papC_4
papC N-terminal domain protein.
  
   0.857
DR95_587
papC N-terminal domain protein.
  
   0.857
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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