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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR95_1303DNA methylase family protein. (350 aa)    
Predicted Functional Partners:
DR95_1300
Bacteriophage Rz lysis family protein.
       0.588
DR95_1301
D-alanyl-D-alanine carboxypeptidase family protein.
       0.588
DR95_1302
Putative membrane protein.
       0.588
DR95_19
major_capsid_P2: phage major capsid protein, P2 family.
  
     0.582
sucC
succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
   
    0.538
recE
Putative exodeoxyribonuclease VIII.
  
     0.520
dam
DNA adenine methylase.
  
  
 0.496
DR95_18
Phage capsid scaffolding (GPO) serine peptidase family protein.
  
     0.495
DR95_1304
Putative bacteriophage protein.
       0.492
arcB
Aerobic respiration control sensor protein ArcB.
  
  
 0.439
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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