| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR95_2314 | cspE_1 | DR95_2314 | DR95_1392 | Formate hydrogenlyase maturation HycH family protein. | 'Cold-shock' DNA-binding domain protein. | 0.565 |
| DR95_2314 | prfC | DR95_2314 | DR95_2340 | Formate hydrogenlyase maturation HycH family protein. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.452 |
| cspE_1 | DR95_2314 | DR95_1392 | DR95_2314 | 'Cold-shock' DNA-binding domain protein. | Formate hydrogenlyase maturation HycH family protein. | 0.565 |
| cspE_1 | prfC | DR95_1392 | DR95_2340 | 'Cold-shock' DNA-binding domain protein. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.484 |
| cspE_1 | rpmE | DR95_1392 | DR95_3045 | 'Cold-shock' DNA-binding domain protein. | Ribosomal protein L31; Binds the 23S rRNA. | 0.414 |
| cspE_1 | rpsL | DR95_1392 | DR95_2752 | 'Cold-shock' DNA-binding domain protein. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.414 |
| cspE_1 | rpsU | DR95_1392 | DR95_2406 | 'Cold-shock' DNA-binding domain protein. | S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.415 |
| prfC | DR95_2314 | DR95_2340 | DR95_2314 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Formate hydrogenlyase maturation HycH family protein. | 0.452 |
| prfC | cspE_1 | DR95_2340 | DR95_1392 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 'Cold-shock' DNA-binding domain protein. | 0.484 |
| prfC | rpmE | DR95_2340 | DR95_3045 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein L31; Binds the 23S rRNA. | 0.590 |
| prfC | rpsL | DR95_2340 | DR95_2752 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.611 |
| prfC | rpsU | DR95_2340 | DR95_2406 | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.590 |
| rpmE | cspE_1 | DR95_3045 | DR95_1392 | Ribosomal protein L31; Binds the 23S rRNA. | 'Cold-shock' DNA-binding domain protein. | 0.414 |
| rpmE | prfC | DR95_3045 | DR95_2340 | Ribosomal protein L31; Binds the 23S rRNA. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.590 |
| rpmE | rpsL | DR95_3045 | DR95_2752 | Ribosomal protein L31; Binds the 23S rRNA. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.938 |
| rpmE | rpsU | DR95_3045 | DR95_2406 | Ribosomal protein L31; Binds the 23S rRNA. | S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.934 |
| rpsL | cspE_1 | DR95_2752 | DR95_1392 | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 'Cold-shock' DNA-binding domain protein. | 0.414 |
| rpsL | prfC | DR95_2752 | DR95_2340 | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.611 |
| rpsL | rpmE | DR95_2752 | DR95_3045 | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | Ribosomal protein L31; Binds the 23S rRNA. | 0.938 |
| rpsL | rpsU | DR95_2752 | DR95_2406 | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.985 |
STRING v12.5 is now available!
