Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycaOHypothetical protein. (585 aa)    
Predicted Functional Partners:
DR95_3433
CAAX protease self-immunity family protein.
  
  
 0.838
ydjA
Putative NAD(P)H nitroreductase ydjA.
  
  
 0.813
ansB
L-asparaginase 2; Belongs to the asparaginase 1 family.
       0.500
ycfD_2
Cupin superfamily protein.
 
   
 0.470
ccmA-5
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
  
 0.443
ompA
Outer membrane protein A; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
     0.441
ybhS
Inner membrane transport permease ybhS.
  
  
 0.436
ybhR
Inner membrane transport permease ybhR.
  
  
 0.436
yadH
Inner membrane transport permease yadH.
  
  
 0.436
DR95_3239
ABC-2 type transporter family protein.
  
  
 0.436
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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