Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dcuD_4Putative cryptic C4-dicarboxylate transporter dcuD. (455 aa)    
Predicted Functional Partners:
metC
cysta_beta_ly_B: cystathionine beta-lyase.
       0.663
DR95_2254
Hypothetical protein.
  
     0.582
dcuA
Anaerobic C4-dicarboxylate transporter dcuA; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
   
 0.563
iaaH
Indole-3-acetyl-aspartic acid hydrolase.
 
     0.560
dcuB
Anaerobic C4-dicarboxylate transporter dcuB; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family.
  
   
 0.532
DR95_2256
Hypothetical protein.
  
     0.531
abgA
Aminobenzoyl-glutamate utilization protein.
 
     0.506
shlB
Hemolysin transporter protein shlB.
  
     0.474
sdcS_2
Dass: transporter, divalent anion:Na+ symporter family protein.
  
   
 0.445
yjjP_2
Hypothetical protein.
  
     0.424
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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