STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhSInner membrane transport permease ybhS. (383 aa)    
Predicted Functional Partners:
ccmA-2
ccmA: heme ABC exporter, ATP-binding protein CcmA.
  
 0.996
emrA_2
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.950
ybhR
Inner membrane transport permease ybhR.
 
    
0.827
nicS
Bacterial regulatory s, tetR family protein.
 
  
 0.803
mdtN_1
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.747
drrA
Hypothetical protein.
 
  
 0.650
DR95_3238
ABC-2 type transporter family protein.
 
    0.572
mdtN_2
RND_mfp: efflux transporter, RND family, MFP subunit.
 
  
 0.566
ydjA
Putative NAD(P)H nitroreductase ydjA.
  
  
 0.545
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
      0.459
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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