STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ripA_1araC-like ligand binding domain protein. (167 aa)    
Predicted Functional Partners:
DR95_165
Helix-turn-helix domain protein.
 
 0.965
ripA_2
Helix-turn-helix domain protein.
 
 
 0.884
ripA_4
Helix-turn-helix domain protein.
  
   0.790
ripA_3
Helix-turn-helix domain protein.
  
   0.789
DR95_163
eamA-like transporter family protein.
 
  
 0.734
flgG
flgG_G_neg: flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.697
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.593
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.566
yidP
Hypothetical protein.
  
  
 0.547
gabR
Aminotransferase class I and II family protein.
  
  
 0.547
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.