STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qseF_3Sigma-54 interaction domain protein. (529 aa)    
Predicted Functional Partners:
rtcB
RNA-splicing ligase RtcB.
 
   
 0.796
rnz
Ribonuclease Z; Zinc phosphodiesterase, which has both exoribonuclease and endoribonuclease activities.
       0.781
rtcB_1
tRNA-splicing ligase RtcB family protein.
 
   
 0.715
DR95_552
Putative nucleotidyltransferase family protein.
 
   
 0.565
DR95_1673
SPFH domain / Band 7 family protein.
  
   
 0.531
ytpA_1
Hypothetical protein.
  
     0.528
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.524
DR95_3200
Rhs_assc_core: RHS repeat-associated core domain protein.
  
     0.514
DR95_1633
Hypothetical protein.
  
     0.513
DR95_573
Hypothetical protein.
  
     0.465
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.