STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efeOImelysin family protein. (307 aa)    
Predicted Functional Partners:
ycdB
Peroxidase ycdB; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
 
  
 0.992
efeU
Iron permease FTR1 family protein.
 
  
 0.988
tpd
Fe2+ transport family protein.
 
    0.925
DR95_1739
Cupredoxin-like domain protein.
 
     0.829
yfeX_1
Dyp_perox_fam: Dyp-type peroxidase family protein.
  
  
 0.738
yfeX_2
Peroxidase family protein.
  
  
 0.738
tetR
Tetracycline repressor protein class H.
  
     0.626
DR95_2251
Hypothetical protein.
  
     0.613
prtR_2
Peptidase S24-like family protein.
  
     0.584
DR95_1283
Hypothetical protein.
  
     0.578
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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