STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comEACompetence ComEA helix-hairpin-helix repeat region domain protein. (123 aa)    
Predicted Functional Partners:
epsF
Type II secretion system (T2SS), F family protein.
  
  
 0.731
gspE
Type II/IV secretion system family protein.
  
  
 0.704
gspO
Type IV leader peptidase family protein; Belongs to the peptidase A24 family.
   
  
 0.693
DR95_1396
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.653
DR95_1395
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.649
queF
Queuine synthase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.523
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.
  
  
 0.515
tesC
Long-chain acyl-CoA thioesterase tesC.
 
     0.505
dprA
dprA: DNA protecting protein DprA.
 
  
 0.490
ppiD
Peptidyl-prolyl cis-trans isomerase D.
       0.480
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.