STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phoRphoR_proteo: phosphate regulon sensor kinase PhoR. (432 aa)    
Predicted Functional Partners:
phoB
phoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 0.987
cheY
Chemotaxis protein CheY.
 
 
 0.842
arcB
Aerobic respiration control sensor protein ArcB.
 
 
0.801
phoP
Transcriptional regulatory protein phoP.
 
 0.758
arcA
Response regulator.
 
 0.758
baeR
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 0.749
ompR
Transcriptional regulatory protein ompR.
 
 0.727
cpxR
Transcriptional regulatory protein CpxR.
 
 0.707
kdpE
KDP operon transcriptional regulatory protein kdpE.
 
 0.686
rssB
Swarming motility regulation protein rssB.
 
 0.629
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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