Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ompCGram-negative porin family protein. (399 aa)    
Predicted Functional Partners:
DR95_1860
Ribonuclease T2 family protein; Belongs to the RNase T2 family.
 
     0.831
DR95_2431
Autotransporter beta-domain protein.
  
  
 0.825
DR95_1149
Fibronectin type III domain protein.
  
 
   0.821
mlaA
Putative phospholipid-binding lipoprotein mlaA.
   
 
 0.818
DR95_2796
Fibronectin type III domain protein.
  
 
   0.813
DR95_1903
rTX-family protein.
  
    0.795
DR95_3673
Bacterial Ig-like domain family protein.
  
    0.779
mrkD
Fimbrial family protein.
  
    0.777
DR95_3103
O-Antigen ligase family protein.
  
    0.774
DR95_3279
Major Facilitator Superfamily protein.
  
     0.773
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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