Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR95_1227 | rdgC | DR95_1227 | DR95_1863 | Hypothetical protein. | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | 0.461 |
| DR95_1227 | rpoA | DR95_1227 | DR95_2118 | Hypothetical protein. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.779 |
| DR95_1227 | rpsL | DR95_1227 | DR95_2752 | Hypothetical protein. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.807 |
| DR95_3524 | rdgC | DR95_3524 | DR95_1863 | Hypothetical protein. | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | 0.479 |
| DR95_3524 | tusC | DR95_3524 | DR95_2750 | Hypothetical protein. | sulf_tusC_dsrF: sulfur relay protein TusC/DsrF; Belongs to the DsrF/TusC family. | 0.413 |
| gyrA | parC | DR95_225 | DR95_2428 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | parC_Gneg: DNA topoisomerase IV, A subunit. | 0.529 |
| gyrA | rdgC | DR95_225 | DR95_1863 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | 0.426 |
| gyrA | rpoA | DR95_225 | DR95_2118 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.588 |
| gyrA | rpoB | DR95_225 | DR95_2762 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.796 |
| gyrA | rpsL | DR95_225 | DR95_2752 | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.522 |
| parC | gyrA | DR95_2428 | DR95_225 | parC_Gneg: DNA topoisomerase IV, A subunit. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.529 |
| parC | rdgC | DR95_2428 | DR95_1863 | parC_Gneg: DNA topoisomerase IV, A subunit. | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | 0.465 |
| parC | rpoA | DR95_2428 | DR95_2118 | parC_Gneg: DNA topoisomerase IV, A subunit. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.420 |
| parC | rpoB | DR95_2428 | DR95_2762 | parC_Gneg: DNA topoisomerase IV, A subunit. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.526 |
| rdgC | DR95_1227 | DR95_1863 | DR95_1227 | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | Hypothetical protein. | 0.461 |
| rdgC | DR95_3524 | DR95_1863 | DR95_3524 | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | Hypothetical protein. | 0.479 |
| rdgC | gyrA | DR95_1863 | DR95_225 | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.426 |
| rdgC | parC | DR95_1863 | DR95_2428 | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | parC_Gneg: DNA topoisomerase IV, A subunit. | 0.465 |
| rdgC | rpoA | DR95_1863 | DR95_2118 | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.531 |
| rdgC | rpoB | DR95_1863 | DR95_2762 | Recombination-associated protein rdgC; May be involved in recombination; Belongs to the RdgC family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.442 |
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