Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hybBPutative membrane protein. (393 aa)    
Predicted Functional Partners:
hybA
4Fe-4S dicluster domain protein.
 
 0.997
hybO
Hydrogenase-2 small chain.
 
  
 0.991
hybC
Hydrogenase-2 large chain; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.985
hybE
Hydrogenase-2 operon protein hybE.
 
  
 0.982
hybD
hupD: hydrogenase expression/formation protein.
 
  
 0.943
tuf1_1
Hypothetical protein; Elongation factor Tu C-terminal domain protein.
  
 
 0.815
tuf
EF-Tu: translation elongation factor Tu.
  
 
 0.815
psrA
Polysulfide reductase chain A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.739
ttrA
Molybdopterin oxidoreductase Fe4S4 domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.711
DR95_1851
Prokaryotic cytochrome b561 family protein.
  
   
 0.677
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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