Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
fpvAHypothetical protein; Secretin and TonB N terminus short domain protein. (920 aa)    
Predicted Functional Partners:
yddA
ABC transporter family protein.
  
  
 0.869
DR95_1920
Peptidase M16 inactive domain protein.
 
  
 0.863
DR95_1917
fecR family protein.
 
  
 0.800
DR95_1915
Hypothetical protein; tonB_Cterm: TonB family C-terminal domain protein.
 
   0.783
DR95_1903
rTX-family protein.
  
     0.754
DR95_3138
tonB dependent receptor family protein.
  
    0.753
DR95_2964
Putative exported FKBP-type peptidyl-prolyl cis-trans isomerase.
 
     0.747
DR95_3673
Bacterial Ig-like domain family protein.
  
     0.746
DR95_2431
Autotransporter beta-domain protein.
  
     0.740
DR95_3279
Major Facilitator Superfamily protein.
  
     0.734
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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