STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiARibosome-associated inhibitor A; yfiA: ribosomal subunit interface protein. (95 aa)    
Predicted Functional Partners:
rmf
Ribosome modulation factor domain protein; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
   
 
 0.900
rpmC
L29: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.867
rpsU
S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.860
rpmI
rpmI_bact: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.859
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
 
   0.858
rpmA
L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.855
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.854
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.853
rpmG
rpmG_bact: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.852
rpmB
L28: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.852
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.