Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR95_2079Hypothetical protein. (207 aa)    
Predicted Functional Partners:
nfdA_1
Amidohydrolase family protein.
 
     0.738
fbaB
Fructose-bisphosphate aldolase class 1.
   
  
 0.694
katA
Catalase; Belongs to the catalase family.
  
   0.570
DR95_1925
Hypothetical protein.
   
  
 0.563
dkgA
2,5-diketo-D-gluconic acid reductase A.
   
    0.538
osmY_2
BON domain protein.
   
    0.538
yhhW_3
Pirin family protein; Belongs to the pirin family.
 
  
 0.538
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.514
DR95_2078
Dihydroorotate dehydrogenase family protein.
  
    0.513
osmY_1
BON domain protein.
  
    0.503
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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