Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
narXNitrate/nitrite sensor protein narX. (601 aa)    
Predicted Functional Partners:
narL
Bacterial regulatory s, luxR family protein.
 
 0.996
degU
Bacterial regulatory s, luxR family protein.
 
 
 0.869
uhpA
Bacterial regulatory s, luxR family protein.
 
 
 0.808
narI
narI: respiratory nitrate reductase, gamma subunit.
 
  
 0.763
uvrY
Response regulator.
 
 
 0.744
narJ
narJ: nitrate reductase molybdenum cofactor assembly chaperone.
 
   
 0.727
narG
narG: nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.702
rcsB
Capsular synthesis regulator component B; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions.
 
 
 0.689
narK
Nitrite extrusion protein 1.
 
  
 0.674
arcB
Aerobic respiration control sensor protein ArcB.
  
  
 0.664
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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