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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narLBacterial regulatory s, luxR family protein. (220 aa)    
Predicted Functional Partners:
narX
Nitrate/nitrite sensor protein narX.
 
 0.996
arcB
Aerobic respiration control sensor protein ArcB.
  
 
 0.855
rcsC
Sensor kinase protein RcsC; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
 
 
 0.789
liaS
Histidine kinase family protein.
 
   0.767
rcsD
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
 
 0.719
narK
Nitrite extrusion protein 1.
 
  
 0.523
baeR
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
  
 
 0.512
rssB
Swarming motility regulation protein rssB.
  
 
 0.477
phoP
Transcriptional regulatory protein phoP.
  
 
 0.474
rssA
Swarming motility regulation sensor protein rssA.
 
 
 0.468
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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