Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ydfHBacterial regulatory s, gntR family protein. (219 aa)    
Predicted Functional Partners:
lutR
Bacterial regulatory s, gntR family protein.
 
  
 0.704
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.663
pdhR_2
Bacterial regulatory s, gntR family protein.
 
  
 0.652
DR95_2092
Hypothetical protein.
 
     0.613
ilvN
Acetolactate synthase isozyme 1 small subunit.
  
    0.607
prmB
(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
   
   0.526
lhgO
FAD dependent oxidoreductase family protein.
 
  
 0.498
nphR
Helix-turn-helix domain protein.
  
  
 0.482
DR95_2095
Natural resistance-associated macrophage family protein.
 
     0.454
pdhR
Pyruvate dehydrogenase complex repressor.
 
  
 0.445
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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