STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bfdBacterioferritin-associated ferredoxin. (65 aa)    
Predicted Functional Partners:
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
 
 0.971
DR95_1643
Hypothetical protein.
  
     0.596
DR95_1263
yejG-like family protein.
  
     0.571
DR95_1927
yqjK-like family protein.
  
     0.559
yjdC
HTH-type transcriptional regulator yjdC.
  
     0.554
flgM
flgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM.
  
    0.553
DR95_2454
Putative prepilin peptidase dependent protein B.
  
     0.540
DR95_2422
Hypothetical protein.
  
     0.528
tomB
Biofilm formation regulator YbaJ family protein.
  
     0.525
gltB
Glutamine amidotransferases class-II family protein.
     
 0.506
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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