STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adhE_3eutH_ACDH: acetaldehyde dehydrogenase. (555 aa)    
Predicted Functional Partners:
adhE_2
Iron-containing alcohol dehydrogenase family protein.
 
 0.992
adhB
Iron-containing alcohol dehydrogenase family protein.
 
 0.949
dhaT
1,3-propanediol dehydrogenase.
 
 0.946
pduA_3
BMC domain protein.
 
  
 0.733
pduA_3-2
BMC domain protein.
 
  
 0.733
ccmL
Carbon dioxide concentrating mechanism protein CcmL.
  
  
 0.723
bssA
Glycyl radical enzyme, PFL2/glycerol dehydratase family protein; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
  
 0.722
pduA_4
BMC domain protein.
 
  
 0.704
bssD
PFLE_PFLC: glycyl-radical enzyme activating family protein.
 
  
 0.703
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily.
  
 0.637
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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