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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prgKIII_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family. (253 aa)    
Predicted Functional Partners:
DR95_2232
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.989
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.988
mxiD_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
 
 0.985
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.979
invA
Invasion protein invA.
 
 
 0.970
eprI
III_needle: type III secretion apparatus needle protein.
  
 
 0.922
sicA
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
 
  
 0.875
spaL
Putative ATP synthase SpaL.
 
  
 0.853
DR95_1709
Hypothetical protein.
  
  
 0.843
spaS
Surface presentation of antigens protein spaS.
 
 
 0.811
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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