Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mxiD_2type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family. (570 aa)    
Predicted Functional Partners:
DR95_2232
fliQ_rel_III: type III secretion, HrpO family protein.
 
 
 0.997
epaR
fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT.
 
 
 0.997
prgK
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family.
 
 
 0.995
epaP
yscR: type III secretion apparatus protein, YscR/HrcR family.
 
 
 0.994
invA
Invasion protein invA.
 
 
 0.976
spaS
Surface presentation of antigens protein spaS.
 
 
 0.938
spaL
Putative ATP synthase SpaL.
 
 
 0.932
sicA
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
 
  
 0.917
eprI
III_needle: type III secretion apparatus needle protein.
  
 
 0.912
invF
Helix-turn-helix domain protein.
 
  
 0.909
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
Server load: medium (60%) [HD]
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