Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR95_2224 | DR95_2236 | DR95_2224 | DR95_2236 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Secretion system effector C (SseC) like family protein. | 0.672 |
DR95_2224 | DR95_2237 | DR95_2224 | DR95_2237 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Putative type III secretion system protein. | 0.425 |
DR95_2224 | DR95_2238 | DR95_2224 | DR95_2238 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Invasion plasmid antigen IpaD family protein. | 0.628 |
DR95_2224 | eprI | DR95_2224 | DR95_2220 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | III_needle: type III secretion apparatus needle protein. | 0.746 |
DR95_2224 | invA | DR95_2224 | DR95_2225 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Invasion protein invA. | 0.852 |
DR95_2224 | mxiD_2 | DR95_2224 | DR95_2223 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family. | 0.870 |
DR95_2224 | sicA | DR95_2224 | DR95_2235 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD. | 0.753 |
DR95_2224 | spaK | DR95_2224 | DR95_2226 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Invasion B family protein. | 0.883 |
DR95_2224 | spaL | DR95_2224 | DR95_2227 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Putative ATP synthase SpaL. | 0.789 |
DR95_2224 | spaS | DR95_2224 | DR95_2234 | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | Surface presentation of antigens protein spaS. | 0.945 |
DR95_2236 | DR95_2224 | DR95_2236 | DR95_2224 | Secretion system effector C (SseC) like family protein. | lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC. | 0.672 |
DR95_2236 | DR95_2237 | DR95_2236 | DR95_2237 | Secretion system effector C (SseC) like family protein. | Putative type III secretion system protein. | 0.704 |
DR95_2236 | DR95_2238 | DR95_2236 | DR95_2238 | Secretion system effector C (SseC) like family protein. | Invasion plasmid antigen IpaD family protein. | 0.942 |
DR95_2236 | eprI | DR95_2236 | DR95_2220 | Secretion system effector C (SseC) like family protein. | III_needle: type III secretion apparatus needle protein. | 0.599 |
DR95_2236 | invA | DR95_2236 | DR95_2225 | Secretion system effector C (SseC) like family protein. | Invasion protein invA. | 0.593 |
DR95_2236 | mxiD_2 | DR95_2236 | DR95_2223 | Secretion system effector C (SseC) like family protein. | type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family. | 0.629 |
DR95_2236 | sicA | DR95_2236 | DR95_2235 | Secretion system effector C (SseC) like family protein. | lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD. | 0.980 |
DR95_2236 | spaK | DR95_2236 | DR95_2226 | Secretion system effector C (SseC) like family protein. | Invasion B family protein. | 0.719 |
DR95_2236 | spaL | DR95_2236 | DR95_2227 | Secretion system effector C (SseC) like family protein. | Putative ATP synthase SpaL. | 0.591 |
DR95_2236 | spaS | DR95_2236 | DR95_2234 | Secretion system effector C (SseC) like family protein. | Surface presentation of antigens protein spaS. | 0.612 |
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