Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DR95_2239Invasion plasmid antigen IpaD family protein. (346 aa)    
Predicted Functional Partners:
DR95_2236
Secretion system effector C (SseC) like family protein.
  
  
 0.937
sicA
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
  
  
 0.926
eprI
III_needle: type III secretion apparatus needle protein.
  
 
 0.881
spaK
Invasion B family protein.
  
    0.571
DR95_2224
lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC.
  
  
 0.564
mxiD_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
  
  
 0.546
spaS
Surface presentation of antigens protein spaS.
  
  
 0.537
DR95_2237
Putative type III secretion system protein.
       0.494
DR95_2238
Invasion plasmid antigen IpaD family protein.
      
0.490
DR95_2230
Surface presentation of antigens family protein.
  
  
 0.444
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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