STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyfB_1NADH-Ubiquinone/plastoquinone (complex I), various chains family protein. (522 aa)    
Predicted Functional Partners:
hyfG
Hydrogenase-4 component G.
 
 
 0.999
hycG
NADH ubiquinone oxidoreductase, 20 Kd subunit.
 
 
 0.993
hyfC
Hydrogenase-4 component C.
 
 
 0.990
hyfB
Hydrogenase-4 component B.
 
  
0.979
mrpA_2
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein.
 
 
0.979
hyfE
Hydrogenase-4 component E.
 
  
 0.977
nuoI_2
4Fe-4S binding domain protein.
 
 
 0.973
DR95_2314
Formate hydrogenlyase maturation HycH family protein.
 
  
 0.954
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
  
 
 0.952
hycI
hycI: hydrogenase maturation peptidase HycI.
 
  
 0.938
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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