Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yidPHypothetical protein. (234 aa)    
Predicted Functional Partners:
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.847
malP_2
PTS-IIBC-alpha: PTS system, alpha-glucoside-specific IIBC component domain protein.
 
  
 0.590
bglF
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.584
aglB
6-phospho-alpha-glucosidase.
 
     0.579
sinR
Helix-turn-helix family protein.
  
  
 0.573
ripA_1
araC-like ligand binding domain protein.
  
  
 0.562
DR95_165
Helix-turn-helix domain protein.
  
  
 0.562
chbR
HTH-type transcriptional regulator ChbR.
  
  
 0.562
lutR
Bacterial regulatory s, gntR family protein.
  
    0.552
cra_1
Fruct_sucro_rep: D-fructose-responsive transcription factor family protein.
  
   
 0.517
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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