Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DR95_2580mgtC family protein. (237 aa)    
Predicted Functional Partners:
DR95_245
Hypothetical protein.
  
  
 0.870
gadC
Glutamate:gamma-aminobutyrate antiporter; 2A0307_GadC: glutamate:gamma-aminobutyrate antiporter.
   
  
 0.699
yegT
Major Facilitator Superfamily protein.
       0.653
phnP
Beta-lactamase superfamily domain protein.
       0.639
DR95_1025
glu-decarb-GAD: glutamate decarboxylase.
   
  
 0.417
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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