Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
nikAnickel_nikA: nickel ABC transporter, nickel/metallophore periplasmic binding protein. (524 aa)    
Predicted Functional Partners:
nikB
Binding--dependent transport system inner membrane component family protein.
 
 0.988
gsiD
Binding--dependent transport system inner membrane component family protein.
 
 0.984
gsiA_2
ABC transporter family protein.
 
 0.951
oppF_3
ABC transporter family protein.
 
 0.948
dppC
Dipeptide transport system permease protein dppC.
 
 
 0.840
ubiE_1
Methyltransferase domain protein.
 
    0.804
ddpC
Binding--dependent transport system inner membrane component family protein.
 
 
 0.788
ddpB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.757
dppB
Binding--dependent transport system inner membrane component family protein.
 
 
 0.746
gsiC
Binding--dependent transport system inner membrane component family protein.
 
 
 0.719
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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