Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ttrRBacterial regulatory s, luxR family protein. (200 aa)    
Predicted Functional Partners:
ttrS
His Kinase A domain protein.
 
 0.998
ttrC
Polysulfide reductase, NrfD family protein.
 
   
 0.808
arcB
Aerobic respiration control sensor protein ArcB.
  
 
 0.707
ttrA
Molybdopterin oxidoreductase Fe4S4 domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.679
ttrB
4Fe-4S dicluster domain protein.
 
   
 0.603
htrB
Lipid A biosynthesis lauroyl acyltransferase; Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)-(lauroyl)-lipid IV(A).
       0.566
pgtB
HAMP domain protein.
  
     0.487
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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