STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR95_2654VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein (159 aa)    
Predicted Functional Partners:
DR95_2821
Uncharacterized protein
 
 
 0.889
DR95_2822
Uncharacterized protein
 
 
 0.861
DR95_2820
annotation not available
 
  
 0.826
DR95_2809
annotation not available
 
  
 0.808
DR95_2810
impA-related N-terminal family protein
 
   
 0.797
DR95_2818
Uncharacterized protein
 
   
 0.796
DR95_2814
Uncharacterized protein; IV_VI_DotU: type IV/VI secretion system , DotU family domain protein
 
   
 0.794
DR95_2816
annotation not available
 
   
 0.793
DR95_2817
annotation not available
 
   
 0.788
DR95_2819
Uncharacterized protein
 
  
 0.788
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, LMG 16708, NCTC 13145, P. vulgaris, Proteus vulgaris, strain PR 1
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