STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttrCPolysulfide reductase, NrfD family protein. (342 aa)    
Predicted Functional Partners:
ttrA
Molybdopterin oxidoreductase Fe4S4 domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.996
ttrB
4Fe-4S dicluster domain protein.
 
 
 0.992
ttrS
His Kinase A domain protein.
 
   
 0.940
ttrR
Bacterial regulatory s, luxR family protein.
 
   
 0.804
DR95_2796
Fibronectin type III domain protein.
  
     0.634
DR95_1149
Fibronectin type III domain protein.
  
     0.632
ydhR
Putative monooxygenase ydhR.
  
     0.602
recE
Putative exodeoxyribonuclease VIII.
  
     0.562
DR95_1849
Putative oxidoreductase.
  
     0.552
DR95_1851
Prokaryotic cytochrome b561 family protein.
  
     0.551
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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