Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
envZOsmolarity sensor protein envZ. (446 aa)    
Predicted Functional Partners:
ompR
Transcriptional regulatory protein ompR.
 
 0.999
arcB
Aerobic respiration control sensor protein ArcB.
 
 
0.948
cpxR
Transcriptional regulatory protein CpxR.
 
 
 0.864
phoP
Transcriptional regulatory protein phoP.
 
 
 0.836
arcA
Response regulator.
 
 
 0.835
baeR
Hypothetical protein; Transcriptional regulatory, C terminal family protein.
 
 
 0.808
phoB
phoB: phosphate regulon transcriptional regulatory protein PhoB.
 
 
 0.798
rssB
Swarming motility regulation protein rssB.
 
 
 0.748
DR95_1130
Putative transcriptional regulatory protein yedW.
 
 
 0.745
kdpE
KDP operon transcriptional regulatory protein kdpE.
 
 
 0.706
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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