STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppA_2Bacterial extracellular solute-binding s, 5 Middle family protein. (535 aa)    
Predicted Functional Partners:
dppB
Binding--dependent transport system inner membrane component family protein.
 0.982
dppC
Dipeptide transport system permease protein dppC.
 0.981
oppF_2
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 0.966
oppD_4
Hypothetical protein; oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein; Belongs to the ABC transporter superfamily.
 
 
 0.951
tsr-2
Methyl-accepting chemotaxis protein I.
 
   
  0.900
ddpB
Binding--dependent transport system inner membrane component family protein.
 
 0.806
sapC
Peptide transport system permease protein sapC.
  
 0.744
sapB
Peptide transport system permease protein sapB.
   
 0.697
ddpC
Binding--dependent transport system inner membrane component family protein.
 
 0.673
gsiD
Binding--dependent transport system inner membrane component family protein.
 
 0.535
Your Current Organism:
Proteus vulgaris
NCBI taxonomy Id: 585
Other names: ATCC 29905, CCUG 35382, CCUG 39507, CDC PR1, CIP 104989, DSM 13387, LMG 16708, LMG:16708, NCTC 13145, P. vulgaris, strain PR 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.